Secondary Structure Prediction

Submit a protein sequence once and compare predictions across multiple external services.

Protein Sequence
Prediction Services
Maximum Sequence Length: 800
Maximum Sequence Length: 1500
Maximum Sequence Length: 4000
Maximum Sequence Length: 400
Maximum Sequence Length: 4000
Maximum Sequence Length: 4000
NetSurfP-2.0 via DTU Health Tech — per-residue secondary structure (H/E/C). Slow: ~25 min.
PHDpsi
Retired upstream from EBI Job Dispatcher.
PROFsec
Retired upstream from EBI Job Dispatcher.
Known Structure (Optional)
Email Notification (Optional)
If provided, SSPred will send a completion email when all selected services finish.

How It Works

SSPred submits your sequence to the selected remote predictors in parallel, stores each response as it arrives, and recomputes the majority-vote line during the run.

Typical Wait Times (150 aa sequence)

  • PSI: 1-7 minutes
  • JPred: 3-5 minutes
  • Sable: 5-7 minutes
  • SSPro: ~8 minutes
  • NetSurf: often 20-25 minutes

Prediction Services