a3d5a90881c6
Complete
XP_004925325.3 collagen alpha-1(IX) chain [Bombyx mori]
Bombyx mori
NCBI
blastpSWISSPROT100BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).
BLAST submits to NCBI's remote API. This can fail if NCBI servers are temporarily overloaded or the query times out (queries can take 2–10 minutes for longer sequences). Try resubmitting — NCBI BLAST queues are usually responsive within a few minutes.
| Source | Raw parsed | High-conf | Low-conf | Discarded | Final (deduped) |
|---|---|---|---|---|---|
| HMMER | 7 | 6 | 1 | 0 | 6 |
| Phobius | 1 | 1 | 0 | 0 | 1 |
| CDD | 2 | 2 | 0 | 0 | 2 |
| ScanProsite | 0 | 0 | 0 | 0 | 0 |
| InterProScan | 1 | 0 | 0 | 1 | 0 |
| Waggawagga | 0 | 0 | 0 | 0 | 0 |
| Total | 11 | 10 | 1 | 0 | 9 |
| Program | Interval | Name / Accession | Evidence | Confidence | |
|---|---|---|---|---|---|
| CDD | 49–221 | LamG superfamily (cl22861) | E-value: 3.82 × 10^-16 (-) | E: 3.8e-16 | |
| InterProScan/PANTHER | 269–538 | COLLAGEN ALPHA (PTHR24023) ×2 | PANTHER PTHR24023 E: 2.50e-64 | E: 2.5e-64 Score: 230 |
|
| HMMER | 269–318 | PF01391 | HMMER/Pfam PF01391 | E: 6.3e-09 | |
| HMMER | 327–384 | PF01391 | HMMER/Pfam PF01391 | E: 6.5e-11 | |
| HMMER | 423–481 | PF01391 | HMMER/Pfam PF01391 | E: 4.3e-08 | |
| HMMER | 495–538 | PF01391 | HMMER/Pfam PF01391 | E: 4.5e-08 | |
| HMMER | 584–639 | PF01391 | HMMER/Pfam PF01391 | E: 3.4e-09 | |
| HMMER | 641–686 | PF01391 | HMMER/Pfam PF01391 | E: 1.3e-06 |
| Program | Position | Feature | Evidence | Confidence | |
|---|---|---|---|---|---|
| None detected. (Run ScanProsite or InterProScan to find ACT_SITE, DISULFID, BINDING residues.) | |||||
| Program | Interval | Name / Feature | Reason flagged | |
|---|---|---|---|---|
| HMMER | 381–445 | PF01391 | evalue_too_high (3.87e-02 > 1e-2) |