Analysis Results

Job ID: a3d5a90881c6 Complete
New Analysis Archive Open in StructMap
ProtSuite Service Status
BLAST UP
core
NCBI BLAST remote search
HMMER UP
core
Pfam domain scan
Phobius UP
core
Signal peptide and TM topology
CDD UP
core
NCBI conserved domains
ScanProsite UP
core
Patterns and functional sites
UniProtKB features UP
core
Curated UniProt positional features for domains, motifs, regions, and sites
Coils UP
core
Waggawagga coiled-coil prediction (Marcoil/Multicoil2/Ncoils/Paircoil2)
SMART UP
experimental
Best-effort HTML parsing
InterProScan UP
slow
Broad integrative annotation
SignalP UP
core
DTU SignalP-5.0 — independent signal peptide cross-check for Phobius
DisorderPred UP
companion
Companion disorder profile using NetSurf plus IUPred3 / ANCHOR2 comparison.
SSPred consensus UP
companion
Optional secondary-structure consensus bundle using the SSPred service adapters.
Download: JSON report Text summary Open StructMap
Summary
Length
705 aa
Mol. Weight
71,545 Da
pI
6.12
GRAVY
-0.4823
Instability
35.99 (Stable)
BLAST hits
0
Domains / motifs
8
Functional sites
0
TM helices
0
Signal peptide
Yes
Run profile: BLAST, HMMER, Phobius, CDD, ScanProsite, UniProtKB features, Coils, InterProScan
Likely 5-15 minutes depending on remote queues.
Warnings
Blast BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).
Coils Waggawagga job did not finish in time (last state: '0').
Sequence Information
Description

XP_004925325.3 collagen alpha-1(IX) chain [Bombyx mori]

Organism

Bombyx mori

Source

NCBI

Sequence (705 aa)
MYFWLPYVLVFLSILFSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVDLIAVYRLDRSDTTGVTLVQGSQDLQMAYRIGGGANLTLPLKEVFPGGLPNRFSVEGTFNARGHRRPWSLLRARSNNVLFSLILMPEPRKVAVLVQGSRAVFKSPELFTTGWHKLHVAVANRSVHIAVDCVELNPVNISAYDFSNATSLTIVSNDDGTPAPIDLQWLSLSCDRYVLKEDSCEEIDNPNYLIATSAPPFAFDPSSREIPSLNTTCNVTCPEGPMGPPGPTGEQGVRGLPGLPGFRGEKGEIGPIGPAGPKGDKGEVGPPGLAVNVTGTGVKGEQGPPGPRGYKGDKGETGSKGDTGDPGPVGFSGIPGVDGKDGIPGSPGPIGPPGIPGPRGPPGPLTNINASLIQGAKGERGSPGRPGRDGGPGPVGPPGKDGERGLPGPEGAPGAAGLPAPSGPRGPPGERGPEGPQGPEGPSGKPGTPGPPGVPAPLITAASIPGPPGPAGVRGEKGDPGLPGLPGRDGLDGIPGIPGHAGPPGAPGVNTVSVQTPSMSENDVRNICESIVRERLNELSASLTAPTQTVVTKRGPPGRPGLPGPPGVRGESGEPGPRGYPGEPGDTGRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPGPVGLPGFEGRRGERGDPGREGPIGPRGPPGQRGVCDCPVAYYSYPQGLVKGP
Physicochemical Properties
Length
705
MW (Da)
71545.34 Da
pI
6.12
GRAVY
-0.4823
Aromaticity
0.0511 (5.1%)
Instability Index
35.99
Helix fraction
0.2085 (20.8%)
Sheet fraction
0.2652 (26.5%)
Turn fraction
0.4894 (48.9%)
Residue Composition
G
18.87%
P
15.46%
L
6.52%
V
6.52%
S
6.38%
R
6.1%
A
5.39%
E
4.96%
D
4.68%
T
4.68%
I
3.69%
N
3.55%
K
3.12%
F
2.7%
Q
2.13%
Program
blastp
Database
SWISSPROT
Max hits
10
Returned
0
SwissProt is the curated section of UniProt — manually annotated, high-quality protein records. Hits here are reliable homologs.
Identity ≥60%: close ortholog  |  30–60%: conserved family  |  <30%: distant or coincidental.
BLAST — Failed

BLAST search failed

BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).

BLAST submits to NCBI's remote API. This can fail if NCBI servers are temporarily overloaded or the query times out (queries can take 2–10 minutes for longer sequences). Try resubmitting — NCBI BLAST queues are usually responsive within a few minutes.

Pipeline — hits per source
Source Raw parsed High-conf Low-conf Discarded Final (deduped)
HMMER 7 6 1 0 6
Phobius 1 1 0 0 1
CDD 2 2 0 0 2
ScanProsite 0 0 0 0 0
InterProScan 1 0 0 1 0
Waggawagga 0 0 0 0 0
Total 11 10 1 0 9
Check annotations below, then click Generate Figure to build the domain architecture diagram.
Select annotations: 0 selected
E. Custom Annotations
▼ optional — write your own MyDomains commands
How to read and customize the domain architecture diagram
▼
A. Domain Architecture & Structural Features
?
ProgramIntervalName / AccessionEvidenceConfidence
CDD 49–221 LamG superfamily (cl22861) E-value: 3.82 × 10^-16 (-) E: 3.8e-16
InterProScan/PANTHER 269–538 COLLAGEN ALPHA (PTHR24023) ×2 PANTHER PTHR24023 E: 2.50e-64 E: 2.5e-64
Score: 230
HMMER 269–318 PF01391 HMMER/Pfam PF01391 E: 6.3e-09
HMMER 327–384 PF01391 HMMER/Pfam PF01391 E: 6.5e-11
HMMER 423–481 PF01391 HMMER/Pfam PF01391 E: 4.3e-08
HMMER 495–538 PF01391 HMMER/Pfam PF01391 E: 4.5e-08
HMMER 584–639 PF01391 HMMER/Pfam PF01391 E: 3.4e-09
HMMER 641–686 PF01391 HMMER/Pfam PF01391 E: 1.3e-06
B. Signal Sequence & Topology
Signal Peptide
Residues 1–21
Cleavage after residue 21
Phobius
C. Functional Sites
?
ProgramPositionFeatureEvidenceConfidence
None detected. (Run ScanProsite or InterProScan to find ACT_SITE, DISULFID, BINDING residues.)
D. Low-confidence / Supplementary
Real parsed hits below strict threshold — include in figure at your discretion
ProgramIntervalName / FeatureReason flagged
HMMER 381–445 PF01391 evalue_too_high (3.87e-02 > 1e-2)
Pfam Domain Hits (HMMER)
?
Raw HMMER results — merged multi-source view in Annotations tab
DomainDescription Start End Length E-value
PF01391 269 318 50 aa 6.35e-09
PF01391 327 384 58 aa 6.49e-11
PF01391 381 445 65 aa 3.87e-02
PF01391 423 481 59 aa 4.34e-08
PF01391 495 538 44 aa 4.46e-08
PF01391 584 639 56 aa 3.41e-09
PF01391 641 686 46 aa 1.30e-06
Signal Peptide
?
Phobius
✓ Detected
Residues 1–21
Cleavage after residue 21
Mature protein starts at residue 22
SignalP-4.1
Not run
Transmembrane Topology
? via Phobius (EBI)
TM Helices
0
Topology String
SIGNAL 1-21; 1-4 N-REGION; 5-16 H-REGION; 17-21 C-REGION; 22-705 NON CYTOPLASMIC
No transmembrane helices detected.