79f52a2255d9
Complete
XP_037866540.1 collagen alpha-1(IV) chain [Bombyx mori]
Bombyx mori
NCBI
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| Source | Raw parsed | High-conf | Low-conf | Discarded | Final (deduped) |
|---|---|---|---|---|---|
| HMMER | 20 | 19 | 0 | 1 | 19 |
| Phobius | 1 | 1 | 0 | 0 | 1 |
| CDD | 10 | 10 | 0 | 0 | 10 |
| ScanProsite | 7 | 7 | 0 | 0 | 7 |
| InterProScan | 2 | 0 | 0 | 2 | 0 |
| Waggawagga | 0 | 0 | 0 | 0 | 0 |
| Total | 40 | 39 | 0 | 1 | 36 |
| Program | Interval | Name / Accession | Evidence | Confidence | |
|---|---|---|---|---|---|
| HMMER | 43–97 | PF01391 | HMMER/Pfam PF01391 | E: 3.0e-07 | |
| CDD | 88–355 | gly_rich_SclB superfamily (cl45768) | E-value: 1.62 × 10^-30 (NC) | E: 1.6e-30 | |
| HMMER | 168–219 | PF01391 | HMMER/Pfam PF01391 | E: 5.9e-07 | |
| HMMER | 177–237 | PF01391 | HMMER/Pfam PF01391 | E: 4.4e-06 | |
| CDD | 260–500 | gly_rich_SclB superfamily (cl45768) | E-value: 1.21 × 10^-31 (NC) | E: 1.2e-31 | |
| HMMER | 260–317 | PF01391 | HMMER/Pfam PF01391 | E: 2.7e-08 | |
| HMMER | 305–362 | PF01391 | HMMER/Pfam PF01391 | E: 2.2e-07 | |
| HMMER | 374–423 | PF01391 | HMMER/Pfam PF01391 | E: 2.4e-07 | |
| HMMER | 427–462 | PF01391 | HMMER/Pfam PF01391 | E: 3.2e-05 | |
| CDD | 433–695 | gly_rich_SclB superfamily (cl45768) | E-value: 3.79 × 10^-28 (NC) | E: 3.8e-28 | |
| HMMER | 466–518 | PF01391 | HMMER/Pfam PF01391 | E: 5.9e-04 | |
| HMMER | 506–563 | PF01391 | HMMER/Pfam PF01391 | E: 1.6e-06 | |
| HMMER | 559–614 | PF01391 | HMMER/Pfam PF01391 | E: 1.6e-07 | |
| CDD | 575–817 | gly_rich_SclB superfamily (cl45768) | E-value: 8.81 × 10^-27 (NC) | E: 8.8e-27 | |
| HMMER | 630–688 | PF01391 | HMMER/Pfam PF01391 | E: 2.4e-08 | |
| HMMER | 668–726 | PF01391 | HMMER/Pfam PF01391 | E: 3.3e-04 | |
| HMMER | 736–775 | PF01391 | HMMER/Pfam PF01391 | E: 2.6e-04 | |
| CDD | 774–1001 | gly_rich_SclB superfamily (cl45768) | E-value: 5.30 × 10^-25 (NC) | E: 5.3e-25 | |
| CDD | 954–1174 | gly_rich_SclB superfamily (cl45768) | E-value: 5.28 × 10^-30 (NC) | E: 5.3e-30 | |
| HMMER | 1126–1183 | PF01391 | HMMER/Pfam PF01391 | E: 5.8e-08 | |
| CDD | 1155–1400 | gly_rich_SclB superfamily (cl45768) | E-value: 3.39 × 10^-25 (NC) | E: 3.4e-25 | |
| HMMER | 1205–1262 | PF01391 | HMMER/Pfam PF01391 | E: 2.9e-08 | |
| HMMER | 1253–1311 | PF01391 | HMMER/Pfam PF01391 | E: 2.6e-07 | |
| CDD | 1314–1514 | gly_rich_SclB superfamily (cl45768) | E-value: 7.12 × 10^-14 (NC) | E: 7.1e-14 | |
| HMMER | 1467–1518 | PF01391 | HMMER/Pfam PF01391 | E: 2.2e-07 | |
| ScanProsite | 1529–1751 | NC1_IV (PS51403) ×2 | PS51403 | — | |
| CDD | 1530–1637 | C4 (pfam01413) ×2 | E-value: 1.69 × 10^-60 (-) | E: 1.7e-60 | |
| CDD | 1640–1749 | C4 (pfam01413) ×2 | E-value: 1.43 × 10^-59 (-) | E: 1.4e-59 | |
| InterProScan/PANTHER | 302–823 | Collagen and Collagen-like Structural Proteins (IPR050938) | PANTHER IPR050938 E: 0.00e+00 | E: 0.0e+00 Score: 873 |
| Program | Position | Feature | Evidence | Confidence | |
|---|---|---|---|---|---|
| ScanProsite | 1544–1635 | DISULFID DISULFID | DISULFID | — | |
| ScanProsite | 1577–1632 | DISULFID DISULFID | DISULFID | — | |
| ScanProsite | 1589–1595 | DISULFID DISULFID | DISULFID | — | |
| ScanProsite | 1654–1747 | DISULFID DISULFID | DISULFID | — | |
| ScanProsite | 1687–1744 | DISULFID DISULFID | DISULFID | — | |
| ScanProsite | 1699–1705 | DISULFID DISULFID | DISULFID | — |
| Domain | Description | Start | End | Length | E-value |
|---|---|---|---|---|---|
| PF01391 | 43 | 97 | 55 aa | 3.01e-07 | |
| PF01391 | 168 | 219 | 52 aa | 5.90e-07 | |
| PF01391 | 177 | 237 | 61 aa | 4.40e-06 | |
| PF01391 | 260 | 317 | 58 aa | 2.70e-08 | |
| PF01391 | 305 | 362 | 58 aa | 2.16e-07 | |
| PF01391 | 374 | 423 | 50 aa | 2.37e-07 | |
| PF01391 | 427 | 462 | 36 aa | 3.23e-05 | |
| PF01391 | 466 | 518 | 53 aa | 5.94e-04 | |
| PF01391 | 506 | 563 | 58 aa | 1.56e-06 | |
| PF01391 | 559 | 614 | 56 aa | 1.63e-07 | |
| PF01391 | 630 | 688 | 59 aa | 2.41e-08 | |
| PF01391 | 668 | 726 | 59 aa | 3.31e-04 | |
| PF01391 | 736 | 775 | 40 aa | 2.57e-04 | |
| PF01391 | 831 | 885 | 55 aa | 1.92e+00 | |
| PF01391 | 1126 | 1183 | 58 aa | 5.84e-08 | |
| PF01391 | 1205 | 1262 | 58 aa | 2.87e-08 | |
| PF01391 | 1253 | 1311 | 59 aa | 2.60e-07 | |
| PF01391 | 1467 | 1518 | 52 aa | 2.24e-07 | |
| PF01413 | 1531 | 1636 | 106 aa | 1.71e-39 | |
| PF01413 | 1641 | 1749 | 109 aa | 9.77e-41 |