Analysis Results

Job ID: 79f52a2255d9 Complete
New Analysis Archive Open in StructMap
ProtSuite Service Status
BLAST UP
core
NCBI BLAST remote search
HMMER UP
core
Pfam domain scan
Phobius UP
core
Signal peptide and TM topology
CDD UP
core
NCBI conserved domains
ScanProsite UP
core
Patterns and functional sites
UniProtKB features UP
core
Curated UniProt positional features for domains, motifs, regions, and sites
Coils UP
core
Waggawagga coiled-coil prediction (Marcoil/Multicoil2/Ncoils/Paircoil2)
SMART UP
experimental
Best-effort HTML parsing
InterProScan UP
slow
Broad integrative annotation
SignalP UP
core
DTU SignalP-5.0 — independent signal peptide cross-check for Phobius
DisorderPred UP
companion
Companion disorder profile using NetSurf plus IUPred3 / ANCHOR2 comparison.
SSPred consensus UP
companion
Optional secondary-structure consensus bundle using the SSPred service adapters.
Download: JSON report Text summary Open StructMap
Summary
Length
1806 aa
Mol. Weight
181,641 Da
pI
8.91
GRAVY
-0.6867
Instability
21.5 (Stable)
BLAST hits
0
Domains / motifs
29
Functional sites
6
TM helices
0
Signal peptide
Yes
Run profile: BLAST, HMMER, Phobius, CDD, ScanProsite, UniProtKB features, Coils, InterProScan
Likely 5-15 minutes depending on remote queues.
Warnings
Blast BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).
Sequence Information
Description

XP_037866540.1 collagen alpha-1(IV) chain [Bombyx mori]

Organism

Bombyx mori

Source

NCBI

Sequence (1806 aa)
MSGPARARLHALHLVPAALLIFFWSPTPVSTVVCNQTLCDCRGIKGDQGSIGPPGIPGLQGDYGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQGLPGLEGVFGFPGLDGCSGIDGVQGVPGIQGPPGDRGIPGPYGEKGLQGLAGEGGVNSRGAKGDQGDGGRPGSYGLPGPQGWRGDSGLPGDEGDQGSMGLKGEPGYSGDLGEDVIGPAGEKGDQGNVGDRGRPASLVIVDEVREYNISITRGSKGEKGLRGQQGVKGIKGETGSVGLRGTYGPNGLQGYKGDQGDDGPRGKPGHRGPQGPPGQKGIKGAPGYAGPDGANGLTGPSGEDARPGNPGPQGFSGEPGIFDETLNEPLLPGSMGPQGPVGFVGPMGAPGLDGAVGQPGLMGPPGLPGAKGLPGPQGAPGISPKGEPGDDGFKGLPGPRGPNGYPGIQGPVGPKGFKGNTVIGEPGEEGTPGIDGIPGLRGDRGEPGAIGPAGYPGRGVYGAGPPGDRGPPGRPGIAGSPGNPGRPGSPGLKGEHGDDCPFCPSGLPGSKGQKGDDGFTGRQGFPGFVGLPGPRGQRGAPGIPGINGPKGPKGNKGLAGMAGPQGPKGPEGRLNTPAYALTVADRGPRGEPGFIGPPGFPGDTGRQGPHGDSGITGFKGVRGDFGQPGTPGRNGSRGRDGVPGRPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGPPGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGEKGSIGPYGDPGSPGYRGPFGSDGQKGQKGMRGDGGYATLPGERGSNGINGERGDNGEPGYPGTPGRSGVIGQKGVTGAPGDIGPDGPPGPRGRKGFPGIIIQGAPGLPGRPGSPGPMGPIGAQGLQGSNGLQGFTGPKGMKGNSGRYGRRGEPGVPGSIGFTGFSGLMGLPGASGKPGERGDKGAPGFNGEPGQDGLVGPLGPKGYIGNPGLTGKPGIPGLPGGKGERGIYGYQGPKGDRGDNAVSGSKGEPGEHGINGYTGRDGIPGQKGVKGPQGMPGLSIRGPPGTKGDKGDTGFSGTPGFQGPRGAIGDKGFPGQTGEPGEKGLPGTDGFAGKNGLIGTKGQQGLYGASGRKGDRGDRGMDGEPGRIGIPGLPGNKGFQGPQGRIGPTGIKGDRGDIGRTIYLPATKGDIGDIGFPGLPGNPGEYGDPGYTGHIGRKGEQGDVGIKGMVGNEGLPGFIGERGDQGPRGLPGRNGEFPERGEQGKAGIDGLPGWPGPMGQKGAPGEYGVDGPEGTPGQPGLTYEGAKGDRGMPGFTGRRGYLGIPGPRGMEGHPGLKGEKGNAGEIGFAISPKGQPGYPGLAGYNGLKGEKGTIGETGRIGIYGEQGLVGVKGETGDEGEAGFIGPPGLQGIEGDKGDTLLPSDILPGQPGDVGLPGFDGRDGVAGIPGSFGRNGYLGVKGQRGEIGLQGPPGEPGPQGLQGIKGKRGLKGFVGLHGSVGRPGPPAPPPPIPKSRGFYFTVHSQTRLIPKCPSGTSPLWEGFSLIHIIANGKAHGQDLGAPGSCLRKFSTMPYLFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAIHSQSSEVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVCMRQWASQTYSTATRTGDVSFVPNAQRRPFRGPSPTGRVPRWHRRGYRVASRKVPSFNKH
Physicochemical Properties
Length
1806
MW (Da)
181640.95 Da
pI
8.91
GRAVY
-0.6867
Aromaticity
0.0642 (6.4%)
Instability Index
21.5
Helix fraction
0.1949 (19.5%)
Sheet fraction
0.232 (23.2%)
Turn fraction
0.5061 (50.6%)
Residue Composition
G
26.63%
P
12.13%
R
5.81%
D
5.2%
L
5.09%
I
4.82%
K
4.82%
E
4.37%
S
4.26%
Q
4.1%
A
3.77%
T
3.71%
F
3.21%
V
3.16%
Y
2.55%
Program
blastp
Database
SWISSPROT
Max hits
10
Returned
0
SwissProt is the curated section of UniProt — manually annotated, high-quality protein records. Hits here are reliable homologs.
Identity ≥60%: close ortholog  |  30–60%: conserved family  |  <30%: distant or coincidental.
BLAST — Failed

BLAST search failed

BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).

BLAST submits to NCBI's remote API. This can fail if NCBI servers are temporarily overloaded or the query times out (queries can take 2–10 minutes for longer sequences). Try resubmitting — NCBI BLAST queues are usually responsive within a few minutes.

Pipeline — hits per source
Source Raw parsed High-conf Low-conf Discarded Final (deduped)
HMMER 20 19 0 1 19
Phobius 1 1 0 0 1
CDD 10 10 0 0 10
ScanProsite 7 7 0 0 7
InterProScan 2 0 0 2 0
Waggawagga 0 0 0 0 0
Total 40 39 0 1 36
Check annotations below, then click Generate Figure to build the domain architecture diagram.
Select annotations: 0 selected
E. Custom Annotations
▼ optional — write your own MyDomains commands
How to read and customize the domain architecture diagram
▼
A. Domain Architecture & Structural Features
?
ProgramIntervalName / AccessionEvidenceConfidence
HMMER 43–97 PF01391 HMMER/Pfam PF01391 E: 3.0e-07
CDD 88–355 gly_rich_SclB superfamily (cl45768) E-value: 1.62 × 10^-30 (NC) E: 1.6e-30
HMMER 168–219 PF01391 HMMER/Pfam PF01391 E: 5.9e-07
HMMER 177–237 PF01391 HMMER/Pfam PF01391 E: 4.4e-06
CDD 260–500 gly_rich_SclB superfamily (cl45768) E-value: 1.21 × 10^-31 (NC) E: 1.2e-31
HMMER 260–317 PF01391 HMMER/Pfam PF01391 E: 2.7e-08
HMMER 305–362 PF01391 HMMER/Pfam PF01391 E: 2.2e-07
HMMER 374–423 PF01391 HMMER/Pfam PF01391 E: 2.4e-07
HMMER 427–462 PF01391 HMMER/Pfam PF01391 E: 3.2e-05
CDD 433–695 gly_rich_SclB superfamily (cl45768) E-value: 3.79 × 10^-28 (NC) E: 3.8e-28
HMMER 466–518 PF01391 HMMER/Pfam PF01391 E: 5.9e-04
HMMER 506–563 PF01391 HMMER/Pfam PF01391 E: 1.6e-06
HMMER 559–614 PF01391 HMMER/Pfam PF01391 E: 1.6e-07
CDD 575–817 gly_rich_SclB superfamily (cl45768) E-value: 8.81 × 10^-27 (NC) E: 8.8e-27
HMMER 630–688 PF01391 HMMER/Pfam PF01391 E: 2.4e-08
HMMER 668–726 PF01391 HMMER/Pfam PF01391 E: 3.3e-04
HMMER 736–775 PF01391 HMMER/Pfam PF01391 E: 2.6e-04
CDD 774–1001 gly_rich_SclB superfamily (cl45768) E-value: 5.30 × 10^-25 (NC) E: 5.3e-25
CDD 954–1174 gly_rich_SclB superfamily (cl45768) E-value: 5.28 × 10^-30 (NC) E: 5.3e-30
HMMER 1126–1183 PF01391 HMMER/Pfam PF01391 E: 5.8e-08
CDD 1155–1400 gly_rich_SclB superfamily (cl45768) E-value: 3.39 × 10^-25 (NC) E: 3.4e-25
HMMER 1205–1262 PF01391 HMMER/Pfam PF01391 E: 2.9e-08
HMMER 1253–1311 PF01391 HMMER/Pfam PF01391 E: 2.6e-07
CDD 1314–1514 gly_rich_SclB superfamily (cl45768) E-value: 7.12 × 10^-14 (NC) E: 7.1e-14
HMMER 1467–1518 PF01391 HMMER/Pfam PF01391 E: 2.2e-07
ScanProsite 1529–1751 NC1_IV (PS51403) ×2 PS51403 —
CDD 1530–1637 C4 (pfam01413) ×2 E-value: 1.69 × 10^-60 (-) E: 1.7e-60
CDD 1640–1749 C4 (pfam01413) ×2 E-value: 1.43 × 10^-59 (-) E: 1.4e-59
InterProScan/PANTHER 302–823 Collagen and Collagen-like Structural Proteins (IPR050938) PANTHER IPR050938 E: 0.00e+00 E: 0.0e+00
Score: 873
B. Signal Sequence & Topology
Signal Peptide
Residues 1–31
Cleavage after residue 31
Phobius
C. Functional Sites
?
ProgramPositionFeatureEvidenceConfidence
ScanProsite 1544–1635 DISULFID DISULFID DISULFID —
ScanProsite 1577–1632 DISULFID DISULFID DISULFID —
ScanProsite 1589–1595 DISULFID DISULFID DISULFID —
ScanProsite 1654–1747 DISULFID DISULFID DISULFID —
ScanProsite 1687–1744 DISULFID DISULFID DISULFID —
ScanProsite 1699–1705 DISULFID DISULFID DISULFID —
Pfam Domain Hits (HMMER)
?
Raw HMMER results — merged multi-source view in Annotations tab
DomainDescription Start End Length E-value
PF01391 43 97 55 aa 3.01e-07
PF01391 168 219 52 aa 5.90e-07
PF01391 177 237 61 aa 4.40e-06
PF01391 260 317 58 aa 2.70e-08
PF01391 305 362 58 aa 2.16e-07
PF01391 374 423 50 aa 2.37e-07
PF01391 427 462 36 aa 3.23e-05
PF01391 466 518 53 aa 5.94e-04
PF01391 506 563 58 aa 1.56e-06
PF01391 559 614 56 aa 1.63e-07
PF01391 630 688 59 aa 2.41e-08
PF01391 668 726 59 aa 3.31e-04
PF01391 736 775 40 aa 2.57e-04
PF01391 831 885 55 aa 1.92e+00
PF01391 1126 1183 58 aa 5.84e-08
PF01391 1205 1262 58 aa 2.87e-08
PF01391 1253 1311 59 aa 2.60e-07
PF01391 1467 1518 52 aa 2.24e-07
PF01413 1531 1636 106 aa 1.71e-39
PF01413 1641 1749 109 aa 9.77e-41
Signal Peptide
?
Phobius
✓ Detected
Residues 1–31
Cleavage after residue 31
Mature protein starts at residue 32
SignalP-4.1
Not run
Transmembrane Topology
? via Phobius (EBI)
TM Helices
0
Topology String
SIGNAL 1-31; 1-10 N-REGION; 11-23 H-REGION; 24-31 C-REGION; 32-1806 NON CYTOPLASMIC
No transmembrane helices detected.