ProtSuite Results — 6845c55587dd — Bioinformatics Lab, Brooklyn College

Analysis Progress

Sequence retrieval

Fetches sequence from UniProt / NCBI or parses your FASTA

Done

Sequence properties

MW, pI, GRAVY, stability — instant local calculation

Done

BLAST homology search

blastp vs SwissProt via NCBI — typically 2–10 min

Done

Pfam domain annotation (HMMER)

hmmscan via EBI HMMER API — typically ~1 min

Done

Signal peptide & TM (Phobius)

Phobius via EBI Job Dispatcher — ~30 sec

Done

Signal peptide (SignalP)

SignalP-4.1 via EBI — independent SP cross-validation, ~30 sec

Skipped

CDD conserved domains (NCBI)

Batch Web CD-Search — typically ~1–2 min

Done

ScanProsite patterns & sites

ExPASy ScanProsite — motifs, active sites, binding sites

Done

UniProtKB feature map

Curated UniProt positional features when an accession is available

Skipped

SMART domain architecture

SMART web adapter — best-effort HTML parsing

Skipped

InterProScan (integrative)

EBI InterProScan — slowest, most comprehensive (~5–8 min)

Done

Coiled-coil prediction (Waggawagga)

Waggawagga — Marcoil/Multicoil2/Ncoils/Paircoil2 heptad-repeat regions (~10–30 sec)

Done

DisorderPred companion

Optional disorder and low-complexity view with IUPred3 / ANCHOR2 comparisons

Skipped

SSPred consensus companion

Optional secondary-structure consensus bundled into the ProtSuite report

Skipped

Merge & deduplicate annotations

Combines all sources into one clean annotation set

Done

Domain architecture figure

PROSITE MyDomains figure (or SVG fallback)

Pending

ProtSuite Service Status

BLAST UP

core

NCBI BLAST remote search

HMMER UP

core

Pfam domain scan

Phobius UP

core

Signal peptide and TM topology

CDD UP

core

NCBI conserved domains

ScanProsite UP

core

Patterns and functional sites

UniProtKB features UP

core

Curated UniProt positional features for domains, motifs, regions, and sites

Coils UP

core

Waggawagga coiled-coil prediction (Marcoil/Multicoil2/Ncoils/Paircoil2)

SMART UP

experimental

Best-effort HTML parsing

InterProScan UP

slow

Broad integrative annotation

SignalP UP

core

DTU SignalP-5.0 — independent signal peptide cross-check for Phobius

DisorderPred UP

companion

Companion disorder profile using NetSurf plus IUPred3 / ANCHOR2 comparison.

SSPred consensus UP

companion

Optional secondary-structure consensus bundle using the SSPred service adapters.

Download: JSON report Text summary Open StructMap

Summary

Length

942 aa

Mol. Weight

96,697 Da

5.75

GRAVY

-0.7272

Instability

38.39 (Stable)

BLAST hits

Domains / motifs

Functional sites

TM helices

Signal peptide

Yes

Run profile: BLAST, HMMER, Phobius, CDD, ScanProsite, UniProtKB features, Coils, InterProScan

Likely 5-15 minutes depending on remote queues.

Warnings

Blast BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).

Sequence Information

Description

XP_004932979.3 collagen alpha-1(I) chain isoform X6 [Bombyx mori]

Organism

Bombyx mori

Source

NCBI

Sequence (942 aa)

MNMSVRGLLIFVVVQGAFQELKLYGSPSQAEVQCVNTFEEIDKSGEGDEIDIDNFLVDQEEDSEGSGRYGTIPPFPPPPPGLDGYSLRLRGDKGERGPRGPPGESIRGPPGPPGPPGPPGPPGTATESSGSGDDQIFGENYASLGQCGCNASTIMSLLQTAPELRGSPGPPGMIGADGRAGPPGMPGQPGTPGERGPVGPRGDKGDRGDAGTRGHEGQPGPKGEAGVDGRPGTAGPPGPPGPPGTPDYNNFEESLMGAYGSAIGRPGAPGPKGDSGQPGPMGPQGERGFPGQKGERGQNGAVGAKGDRGHPGPQGDRGVKGDRGNPGFDGRPGIPGANGRPADKGEKGERGEPGPPGSPPAGVFNAADPEFMVAGSQVTGAKGDKGEKGEKGTRGNDGPPGFPGKDGKQGERGDIGPSGLPGMAGSPGPQGFKGDRGERGPPGPISVASAGTDIITIKGDKGEPGARGRRGRSGPGGARGATGAPGPPGPAGRPGDKGDTGLPGWMGRPGTLGPPGAPGPVGPKGEKGDPGVNILDVSMFKGEKGDRGFDGVPGVQGPPGPPGKPASEPVQYLPGPPGPPGPPGSPGTPGVSVVGPKGEPGVSYYEEGPVHGSPKFYGRPGFSARSQPADESSAQKTVPGAAVFQTTEEMMKLASSSPVGALAYVAEEQALFVKVNSGWQYVLLGSLVTQSKPPPTPAPAPLPMPAASLVHVPPISNLVENSPTPIGPSLRMAALNDPLSGNMHGVRRADYACYRQARRAGLRGTFRAFLTSRIQNLDSTVRYADRHLPVLNTQGDVLFKSFSDIFDGSGGIVAGTPRIYSFNGKNIITDSHWPQKLIWHGSHASGERALDTFCEEWQSNDPTNKGMAASLYSHKILSQERYSCNNHFAVLCIEATSNVSVRRKRDTHRFNTTEDSDEDYEMRPDEYEELINDIIAQPLRYN

Physicochemical Properties

Length

942

MW (Da)

96697.0 Da

5.75

GRAVY

-0.7272

Aromaticity

0.0573 (5.7%)

Instability Index

38.39

Helix fraction

0.2282 (22.8%)

Sheet fraction

0.2219 (22.2%)

Turn fraction

0.4798 (48.0%)

Residue Composition

18.68%

13.8%

6.69%

6.05%

5.63%

4.78%

4.56%

4.03%

3.82%

3.5%

3.29%

3.18%

2.97%

Program
blastp

Database
SWISSPROT

Max hits
10

Returned
0

SwissProt is the curated section of UniProt — manually annotated, high-quality protein records. Hits here are reliable homologs.
Identity ≥60%: close ortholog | 30–60%: conserved family | <30%: distant or coincidental.

BLAST — Failed

BLAST search failed

BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).

BLAST submits to NCBI's remote API. This can fail if NCBI servers are temporarily overloaded or the query times out (queries can take 2–10 minutes for longer sequences). Try resubmitting — NCBI BLAST queues are usually responsive within a few minutes.

Pipeline — hits per source

Source	Raw parsed	High-conf	Discarded	Final (deduped)
HMMER	9	9	0	9
Phobius	1	1	0	1
CDD	4	4	0	4
ScanProsite	0	0	0	0
InterProScan	1	0	1	0
Waggawagga	0	0	0	0
Total	15	15	0	13

Check annotations below, then click Generate Figure to build the domain architecture diagram.

Select annotations: 0 selected

E. Custom Annotations

▼ optional — write your own MyDomains commands

How to read and customize the domain architecture diagram

▼

Feature	Format	Reason
Signal peptide	`1,end,2,2,Signal peptide`	Labeled region at N-terminus
TM helix	`start,end,4,1,TM helix`	Distinct structural block
Disulfide bridge	`start,end,2`	Range marks the covalent span; no site pins
Active site	`pos,1`	Pin marker at each catalytic residue
Metal-binding	`pos,0`	Tick at individual ligand residue

A. Domain Architecture & Structural Features

Program	Interval	Name / Accession	Evidence	Confidence
CDD	90–230	gly_rich_SclB superfamily (cl45768)	E-value: 2.01e-04 (NC)	E: 2.0e-04
HMMER	91–124	PF01391	HMMER/Pfam PF01391	E: 7.9e-04
HMMER	165–218	PF01391	HMMER/Pfam PF01391	E: 7.3e-08
HMMER	187–245	PF01391	HMMER/Pfam PF01391	E: 4.6e-09
CDD	264–444	gly_rich_SclB superfamily (cl45768)	E-value: 1.49 × 10^-31 (NC)	E: 1.5e-31
HMMER	264–321	PF01391	HMMER/Pfam PF01391	E: 3.0e-09
HMMER	306–358	PF01391	HMMER/Pfam PF01391	E: 7.6e-07
HMMER	383–441	PF01391	HMMER/Pfam PF01391	E: 1.4e-08
HMMER	458–513	PF01391	HMMER/Pfam PF01391	E: 6.5e-07
HMMER	641–688	PF20010 ×2	HMMER/Pfam PF20010	E: 8.3e-16
CDD	727–896	Endostatin-like superfamily (cl23985) ×2	E-value: 9.14 × 10^-83 (-)	E: 9.1e-83
InterProScan/PANTHER	88–503	Collagen and Collagen-like Structural Proteins (IPR050938)	PANTHER IPR050938 E: 1.10e-82	E: 1.1e-82 Score: 290

B. Signal Sequence & Topology

Signal Peptide

Residues 1–19

Cleavage after residue 19
Phobius

C. Functional Sites

	Program	Position	Feature	Evidence	Confidence
None detected. (Run ScanProsite or InterProScan to find ACT_SITE, DISULFID, BINDING residues.)

HMMER

9 hits parsed

Status	Type	Interval	Label	E-value / Score
discarded	domain	730–896	PF06482	1.53e-60
high-conf	domain	91–124	PF01391	7.94e-04
high-conf	domain	165–218	PF01391	7.31e-08
high-conf	domain	187–245	PF01391	4.63e-09
high-conf	domain	264–321	PF01391	2.96e-09
high-conf	domain	306–358	PF01391	7.57e-07
high-conf	domain	383–441	PF01391	1.42e-08
high-conf	domain	458–513	PF01391	6.55e-07
high-conf	domain	641–688	PF20010	8.34e-16

Phobius

1 hits parsed

Status	Type	Interval	Label	E-value / Score
high-conf	signal_peptide	1–19	Signal peptide	—

CDD

4 hits parsed

Status	Type	Interval	Label	E-value / Score
high-conf	domain	727–896	Endostatin-like superfamily (cl23985)	9.14e-83
high-conf	domain	264–444	gly_rich_SclB superfamily (cl45768)	1.49e-31
discarded	domain	641–689	Collagen_trimer superfamily (cl45392)	1.20e-13
high-conf	domain	90–230	gly_rich_SclB superfamily (cl45768)	2.01e-04

InterProScan/PANTHER

1 hits parsed

Status	Type	Interval	Label	E-value / Score
high-conf	family	88–503	Collagen and Collagen-like Structural Proteins (IPR050938)	1.10e-82

Pfam Domain Hits (HMMER)

Raw HMMER results — merged multi-source view in Annotations tab

Domain	Start	End	Length	E-value
PF06482	730	896	167 aa	1.53e-60
PF01391	91	124	34 aa	7.94e-04
PF01391	165	218	54 aa	7.31e-08
PF01391	187	245	59 aa	4.63e-09
PF01391	264	321	58 aa	2.96e-09
PF01391	306	358	53 aa	7.57e-07
PF01391	383	441	59 aa	1.42e-08
PF01391	458	513	56 aa	6.55e-07
PF20010	641	688	48 aa	8.34e-16

Signal Peptide

Phobius

✓ Detected

Residues 1–19
Cleavage after residue 19
Mature protein starts at residue 20

SignalP-4.1

Not run

Transmembrane Topology

? via Phobius (EBI)

TM Helices

Topology String

SIGNAL 1-19; 1-6 N-REGION; 7-14 H-REGION; 15-19 C-REGION; 20-942 NON CYTOPLASMIC

No transmembrane helices detected.

{
  "_request": {
    "enabled_modules": [
      "BLAST",
      "HMMER",
      "Phobius",
      "CDD",
      "ScanProsite",
      "UniProtKB features",
      "Coils",
      "InterProScan"
    ],
    "input_type": "auto",
    "runtime_hint": "Likely 5-15 minutes depending on remote queues.",
    "submitted_at": "2026-10-12T19:25:33.072857+00:00",
    "submitted_value": "XP_004932979"
  },
  "annotation_debug": {
    "deduped": 13,
    "deduped_per_source": {
      "CDD": 4,
      "HMMER": 9,
      "InterProScan/PANTHER": 1,
      "Phobius": 1
    },
    "discarded": 0,
    "filter_log": [],
    "filtered_per_source": {
      "CDD": 4,
      "HMMER": 9,
      "InterProScan/PANTHER": 1,
      "Phobius": 1
    },
    "high_confidence": 15,
    "low_confidence": 0,
    "raw_per_source": {
      "CDD": 4,
      "HMMER": 9,
      "InterProScan": 1,
      "Phobius": 1,
      "ScanProsite": 0,
      "Waggawagga": 0
    },
    "raw_total": 15,
    "validated": 15
  },
  "annotation_summary": {
    "domain_count": 12,
    "has_signal_peptide": true,
    "site_count": 0,
    "source_summary": {
      "CDD": 4,
      "HMMER": 9,
      "InterProScan": 1,
      "Phobius": 1,
      "ScanProsite": 0,
      "Waggawagga": 0
    },
    "tm_helix_count": 0
  },
  "annotations": [
    {
      "accession": "",
      "description": "Signal peptide (Phobius), cleavage after residue 19",
      "display_priority": 10,
      "e_value": null,
      "end": 19,
      "evidence": "Phobius  SP 1\u201319",
      "feature_type": "signal_peptide",
      "label": "Signal peptide",
      "score": null,
      "source": "Phobius",
      "source_support": [
        "Phobius"
      ],
      "start": 1
    },
    {
      "accession": "cl45768",
      "description": "gly_rich_SclB superfamily",
      "display_priority": 30,
      "e_value": 0.000201051,
      "end": 230,
      "evidence": "E-value: 2.01e-04  (NC)",
      "feature_type": "domain",
      "label": "gly_rich_SclB superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 90
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 0.0007941634498043508,
      "end": 124,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 91
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 7.314256474035904e-08,
      "end": 218,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 165
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 4.634542346451601e-09,
      "end": 245,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 187
    },
    {
      "accession": "cl45768",
      "description": "gly_rich_SclB superfamily",
      "display_priority": 30,
      "e_value": 1.49153e-31,
      "end": 444,
      "evidence": "E-value: 1.49 \u00d7 10^-31  (NC)",
      "feature_type": "domain",
      "label": "gly_rich_SclB superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 264
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 2.962304865175632e-09,
      "end": 321,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 264
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 7.567254860136497e-07,
      "end": 358,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 306
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 1.4158687152775525e-08,
      "end": 441,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 383
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 6.548047158962012e-07,
      "end": 513,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 458
    },
    {
      "accession": "PF20010",
      "description": "",
      "display_priority": 30,
      "e_value": 8.344513600619126e-16,
      "end": 688,
      "evidence": "HMMER/Pfam  PF20010",
      "feature_type": "domain",
      "label": "PF20010",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "CDD",
        "HMMER"
      ],
      "start": 641
    },
    {
      "accession": "cl23985",
      "description": "Endostatin-like superfamily",
      "display_priority": 30,
      "e_value": 9.13705e-83,
      "end": 896,
      "evidence": "E-value: 9.14 \u00d7 10^-83  (-)",
      "feature_type": "domain",
      "label": "Endostatin-like superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD",
        "HMMER"
      ],
      "start": 727
    },
    {
      "accession": "IPR050938",
      "description": "Collagen and Collagen-like Structural Proteins",
      "display_priority": 35,
      "e_value": 1.1e-82,
      "end": 503,
      "evidence": "PANTHER  IPR050938  E: 1.10e-82",
      "feature_type": "family",
      "label": "Collagen and Collagen-like Structural Proteins",
      "score": 289.7,
      "source": "InterProScan/PANTHER",
      "source_support": [
        "InterProScan/PANTHER"
      ],
      "start": 88
    }
  ],
  "blast": {
    "max_hits_requested": 10
  },
  "companion_disorder": {},
  "companion_sspred": {},
  "completed_at": "2026-10-12 19:38 UTC",
  "figure_ok": false,
  "figure_renderer": "none",
  "hmmer": {
    "domains": [
      {
        "description": "",
        "e_value": 1.5335055265990997e-60,
        "name": "PF06482",
        "seq_end": 896,
        "seq_start": 730
      },
      {
        "description": "",
        "e_value": 0.0007941634498043508,
        "name": "PF01391",
        "seq_end": 124,
        "seq_start": 91
      },
      {
        "description": "",
        "e_value": 7.314256474035904e-08,
        "name": "PF01391",
        "seq_end": 218,
        "seq_start": 165
      },
      {
        "description": "",
        "e_value": 4.634542346451601e-09,
        "name": "PF01391",
        "seq_end": 245,
        "seq_start": 187
      },
      {
        "description": "",
        "e_value": 2.962304865175632e-09,
        "name": "PF01391",
        "seq_end": 321,
        "seq_start": 264
      },
      {
        "description": "",
        "e_value": 7.567254860136497e-07,
        "name": "PF01391",
        "seq_end": 358,
        "seq_start": 306
      },
      {
        "description": "",
        "e_value": 1.4158687152775525e-08,
        "name": "PF01391",
        "seq_end": 441,
        "seq_start": 383
      },
      {
        "description": "",
        "e_value": 6.548047158962012e-07,
        "name": "PF01391",
        "seq_end": 513,
        "seq_start": 458
      },
      {
        "description": "",
        "e_value": 8.344513600619126e-16,
        "name": "PF20010",
        "seq_end": 688,
        "seq_start": 641
      }
    ]
  },
  "job_id": "6845c55587dd",
  "low_confidence_annotations": [],
  "module_errors": {
    "blast": "BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt)."
  },
  "module_warnings": {},
  "motif_results": [],
  "phobius": {
    "has_signal_peptide": true,
    "signal_peptide_end": 19,
    "tm_count": 0,
    "tm_helices": [],
    "topology": "SIGNAL 1-19; 1-6 N-REGION; 7-14 H-REGION; 15-19 C-REGION; 20-942 NON CYTOPLASMIC"
  },
  "properties": {
    "ambiguous_residues_replaced": 0,
    "amino_acid_count": {
      "A": 63,
      "C": 7,
      "D": 53,
      "E": 53,
      "F": 28,
      "G": 176,
      "H": 12,
      "I": 31,
      "K": 38,
      "L": 43,
      "M": 18,
      "N": 30,
      "P": 130,
      "Q": 33,
      "R": 57,
      "S": 63,
      "T": 36,
      "V": 45,
      "W": 5,
      "Y": 21
    },
    "amino_acid_percent": {
      "A": 6.69,
      "C": 0.74,
      "D": 5.63,
      "E": 5.63,
      "F": 2.97,
      "G": 18.68,
      "H": 1.27,
      "I": 3.29,
      "K": 4.03,
      "L": 4.56,
      "M": 1.91,
      "N": 3.18,
      "P": 13.8,
      "Q": 3.5,
      "R": 6.05,
      "S": 6.69,
      "T": 3.82,
      "V": 4.78,
      "W": 0.53,
      "Y": 2.23
    },
    "aromaticity": 0.0573,
    "gravy": -0.7272,
    "helix_fraction": 0.2282,
    "instability_index": 38.39,
    "is_stable": true,
    "isoelectric_point": 5.75,
    "length": 942,
    "molecular_weight_da": 96697.0,
    "sheet_fraction": 0.2219,
    "turn_fraction": 0.4798
  },
  "raw_annotations": [
    {
      "accession": "PF06482",
      "description": "",
      "display_priority": 30,
      "e_value": 1.5335055265990997e-60,
      "end": 896,
      "evidence": "HMMER/Pfam  PF06482",
      "feature_type": "domain",
      "label": "PF06482",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 730
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 0.0007941634498043508,
      "end": 124,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 91
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 7.314256474035904e-08,
      "end": 218,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 165
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 4.634542346451601e-09,
      "end": 245,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 187
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 2.962304865175632e-09,
      "end": 321,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 264
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 7.567254860136497e-07,
      "end": 358,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 306
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 1.4158687152775525e-08,
      "end": 441,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 383
    },
    {
      "accession": "PF01391",
      "description": "",
      "display_priority": 30,
      "e_value": 6.548047158962012e-07,
      "end": 513,
      "evidence": "HMMER/Pfam  PF01391",
      "feature_type": "domain",
      "label": "PF01391",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 458
    },
    {
      "accession": "PF20010",
      "description": "",
      "display_priority": 30,
      "e_value": 8.344513600619126e-16,
      "end": 688,
      "evidence": "HMMER/Pfam  PF20010",
      "feature_type": "domain",
      "label": "PF20010",
      "score": null,
      "source": "HMMER",
      "source_support": [
        "HMMER"
      ],
      "start": 641
    },
    {
      "accession": "",
      "description": "Signal peptide (Phobius), cleavage after residue 19",
      "display_priority": 10,
      "e_value": null,
      "end": 19,
      "evidence": "Phobius  SP 1\u201319",
      "feature_type": "signal_peptide",
      "label": "Signal peptide",
      "score": null,
      "source": "Phobius",
      "source_support": [
        "Phobius"
      ],
      "start": 1
    },
    {
      "accession": "cl23985",
      "description": "Endostatin-like superfamily",
      "display_priority": 60,
      "e_value": 9.13705e-83,
      "end": 896,
      "evidence": "E-value: 9.14 \u00d7 10^-83  (-)",
      "feature_type": "domain",
      "label": "Endostatin-like superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 727
    },
    {
      "accession": "cl45768",
      "description": "gly_rich_SclB superfamily",
      "display_priority": 60,
      "e_value": 1.49153e-31,
      "end": 444,
      "evidence": "E-value: 1.49 \u00d7 10^-31  (NC)",
      "feature_type": "domain",
      "label": "gly_rich_SclB superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 264
    },
    {
      "accession": "cl45392",
      "description": "Collagen_trimer superfamily",
      "display_priority": 60,
      "e_value": 1.20252e-13,
      "end": 689,
      "evidence": "E-value: 1.20 \u00d7 10^-13  (-)",
      "feature_type": "domain",
      "label": "Collagen_trimer superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 641
    },
    {
      "accession": "cl45768",
      "description": "gly_rich_SclB superfamily",
      "display_priority": 60,
      "e_value": 0.000201051,
      "end": 230,
      "evidence": "E-value: 2.01e-04  (NC)",
      "feature_type": "domain",
      "label": "gly_rich_SclB superfamily",
      "score": null,
      "source": "CDD",
      "source_support": [
        "CDD"
      ],
      "start": 90
    },
    {
      "accession": "IPR050938",
      "description": "Collagen and Collagen-like Structural Proteins",
      "display_priority": 60,
      "e_value": 1.1e-82,
      "end": 503,
      "evidence": "PANTHER  IPR050938  E: 1.10e-82",
      "feature_type": "family",
      "label": "Collagen and Collagen-like Structural Proteins",
      "score": 289.7,
      "source": "InterProScan/PANTHER",
      "source_support": [
        "InterProScan/PANTHER"
      ],
      "start": 88
    }
  ],
  "retrieval": {
    "error": "",
    "header": "XP_004932979.3 collagen alpha-1(I) chain isoform X6 [Bombyx mori]",
    "organism": "Bombyx mori",
    "sequence": "MNMSVRGLLIFVVVQGAFQELKLYGSPSQAEVQCVNTFEEIDKSGEGDEIDIDNFLVDQEEDSEGSGRYGTIPPFPPPPPGLDGYSLRLRGDKGERGPRGPPGESIRGPPGPPGPPGPPGPPGTATESSGSGDDQIFGENYASLGQCGCNASTIMSLLQTAPELRGSPGPPGMIGADGRAGPPGMPGQPGTPGERGPVGPRGDKGDRGDAGTRGHEGQPGPKGEAGVDGRPGTAGPPGPPGPPGTPDYNNFEESLMGAYGSAIGRPGAPGPKGDSGQPGPMGPQGERGFPGQKGERGQNGAVGAKGDRGHPGPQGDRGVKGDRGNPGFDGRPGIPGANGRPADKGEKGERGEPGPPGSPPAGVFNAADPEFMVAGSQVTGAKGDKGEKGEKGTRGNDGPPGFPGKDGKQGERGDIGPSGLPGMAGSPGPQGFKGDRGERGPPGPISVASAGTDIITIKGDKGEPGARGRRGRSGPGGARGATGAPGPPGPAGRPGDKGDTGLPGWMGRPGTLGPPGAPGPVGPKGEKGDPGVNILDVSMFKGEKGDRGFDGVPGVQGPPGPPGKPASEPVQYLPGPPGPPGPPGSPGTPGVSVVGPKGEPGVSYYEEGPVHGSPKFYGRPGFSARSQPADESSAQKTVPGAAVFQTTEEMMKLASSSPVGALAYVAEEQALFVKVNSGWQYVLLGSLVTQSKPPPTPAPAPLPMPAASLVHVPPISNLVENSPTPIGPSLRMAALNDPLSGNMHGVRRADYACYRQARRAGLRGTFRAFLTSRIQNLDSTVRYADRHLPVLNTQGDVLFKSFSDIFDGSGGIVAGTPRIYSFNGKNIITDSHWPQKLIWHGSHASGERALDTFCEEWQSNDPTNKGMAASLYSHKILSQERYSCNNHFAVLCIEATSNVSVRRKRDTHRFNTTEDSDEDYEMRPDEYEELINDIIAQPLRYN",
    "source": "ncbi",
    "status": "ok"
  },
  "signalp": {},
  "uniprot_features": {}
}

Analysis Results

BLAST search failed