Analysis Results

Job ID: 1ebe5b4ae384 Complete
New Analysis Archive Open in StructMap
ProtSuite Service Status
BLAST UP
core
NCBI BLAST remote search
HMMER UP
core
Pfam domain scan
Phobius UP
core
Signal peptide and TM topology
CDD UP
core
NCBI conserved domains
ScanProsite UP
core
Patterns and functional sites
UniProtKB features UP
core
Curated UniProt positional features for domains, motifs, regions, and sites
Coils UP
core
Waggawagga coiled-coil prediction (Marcoil/Multicoil2/Ncoils/Paircoil2)
SMART UP
experimental
Best-effort HTML parsing
InterProScan UP
slow
Broad integrative annotation
SignalP UP
core
DTU SignalP-5.0 — independent signal peptide cross-check for Phobius
DisorderPred UP
companion
Companion disorder profile using NetSurf plus IUPred3 / ANCHOR2 comparison.
SSPred consensus UP
companion
Optional secondary-structure consensus bundle using the SSPred service adapters.
Download: JSON report Text summary Open StructMap
Summary
Length
1640 aa
Mol. Weight
159,796 Da
pI
6.37
GRAVY
-1.171
Instability
46.97 (Unstable)
BLAST hits
0
Domains / motifs
20
Functional sites
0
TM helices
0
Signal peptide
Yes
Run profile: BLAST, HMMER, Phobius, CDD, ScanProsite, UniProtKB features, Coils, InterProScan
Likely 5-15 minutes depending on remote queues.
Warnings
Blast BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).
Sequence Information
Description

NP_001165114.1 collagen precursor [Bombyx mori]

Organism

Bombyx mori

Source

NCBI

Sequence (1640 aa)
MGPGIMIKFCILAVLALSLVSADKPKTETTSTTAKKATEVPAKKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQDNEVVVDIQDDEKKQYYETNYDTSAYGFGYDVGPNGQFHHENRGPDGVVYGCYGYVDTEGYLRATHYVADSHGYRVVEPEKPVEVFPDEKYEYDENYEPTPSATGQTIPWNKLFFPQGCGRTPGGVPPQPFKPKPKPKPPVDSTGQTSNPSPGVAYPGQGPNGPYGPGGSGGSGGPGGPGGPNGPYGPGGPGGPNGPYGPGGTGGPNGPYGPGGQDGSYRPDGSYGPDGSYQPEGSYGPDGSWQGGYYPGTPGSPGTPGSPGSPGSPGSPGTPGSPGTPGTPGSGGGYYPGQDGTGGPTGPSGGGGGYYPGSPGSPGTPGTPGTPGTPGGPGGPGGPGGPGGPGGPNGPNGPGGSDGGQYYPALPGSPGTPGSPGTPGGPGGPGGPGGPGGPGGPGGPGGPDQPSYPGQPGQPGTPGYPGQPGYPGQPGTPGQPGTPGQPGYPGQGGQPINPGQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGTPGQPGQSGYPGQGGPQQGGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQAGQPVNPAQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQAGQPVNPAQPGYPGQPSQPGYPGQPGQPGTPGQPGTPGQPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPIKPGQTGYPGQPGQPGYPGQPGQPGTPGQPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQGGQPVNPAQPGYPGQPSQPGYPGQLGQPGTPGQPGQPGTPGQPGTPGQPGQPGYPGQGGQPINPTQPGSPGQLGQPGYPGQPGQPAGQPGYPGQGGQQQGGQPINPSQPGYPSHPGQPGYPGQPGQPGQPGQPGTPGQPGQPGYPGQGGQPIKPGQPGYPGQPGQPGYPGQPGQPGAPGQPGQPGQPVQPGTPGQAGQPGYPGQGGQPIKPAQPGHPGQPGQPGQPGTPGQPGQPGYPGQPGQPGQPGQPGQQGYPGQGGPQQGGQPINPSQPGYPGQSGQPGYPGQPVQPGQPGQPGTPGEPGQPGTPGQPGYPGQGGPQQGGQPMNPSQPEYPSQPGQPGQPGTPGQAGHPGQPGHPGAPGQPGYPGQPGQTGAPGQAGYPGQGGPQQGGQPINPSQPGHPVQPGQPGQPGQPGKPGQPGTPGQPGAPGQPGTPGQPGYPGQNGPQQGGQPIKPDQPGYPGQPGAPGQPGTPGQPGQPGTPGQPGYPGQGGPQQGGQPINPDQPGQPGPPGYPGQGGQPINPSQSGYPGQPGQGGDSVSSGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQGYAPYGIIGFIPVVFVPYCPGNGSAMNTAQQNFPQAVPVQYNCAQCQANRDVYRFAGRNNGARAFKELKELKSLDELNDLIRNRIKPTTRTLRQIAAHPKILETKH
Physicochemical Properties
Length
1640
MW (Da)
159795.68 Da
pI
6.37
GRAVY
-1.171
Aromaticity
0.0646 (6.5%)
Instability Index
46.97
Helix fraction
0.0811 (8.1%)
Sheet fraction
0.1707 (17.1%)
Turn fraction
0.5939 (59.4%)
Residue Composition
G
27.2%
P
24.7%
Q
14.51%
Y
5.49%
T
5.12%
S
3.48%
A
2.74%
V
2.56%
N
2.44%
K
2.07%
E
1.65%
I
1.65%
D
1.59%
L
1.28%
R
0.91%
Program
blastp
Database
SWISSPROT
Max hits
10
Returned
0
SwissProt is the curated section of UniProt — manually annotated, high-quality protein records. Hits here are reliable homologs.
Identity ≥60%: close ortholog  |  30–60%: conserved family  |  <30%: distant or coincidental.
BLAST — Failed

BLAST search failed

BLAST timed out after 10 minutes. Try a smaller sequence or a faster database (SwissProt).

BLAST submits to NCBI's remote API. This can fail if NCBI servers are temporarily overloaded or the query times out (queries can take 2–10 minutes for longer sequences). Try resubmitting — NCBI BLAST queues are usually responsive within a few minutes.

Pipeline — hits per source
Source Raw parsed High-conf Low-conf Discarded Final (deduped)
HMMER 18 14 3 1 14
Phobius 1 1 0 0 1
CDD 3 3 0 0 3
ScanProsite 2 2 0 0 2
InterProScan 3 0 0 3 0
Waggawagga 0 0 0 0 0
Total 27 23 3 1 21
Check annotations below, then click Generate Figure to build the domain architecture diagram.
Select annotations: 0 selected
E. Custom Annotations
▼ optional — write your own MyDomains commands
How to read and customize the domain architecture diagram
▼
A. Domain Architecture & Structural Features
?
ProgramIntervalName / AccessionEvidenceConfidence
ScanProsite 110–177 CHIT_BIND_RR_2 (PS51155) ×2 PS51155 —
CDD 113–161 Chitin_bind_4 (pfam00379) E-value: 1.29 × 10^-7 (-) E: 1.3e-07
CDD 493–1036 Glutenin_hmw superfamily (cl26620) E-value: 1.24 × 10^-25 (-) E: 1.2e-25
HMMER 498–556 PF01391 HMMER/Pfam PF01391 E: 7.4e-06
HMMER 540–598 PF01391 HMMER/Pfam PF01391 E: 8.2e-08
HMMER 605–661 PF01391 HMMER/Pfam PF01391 E: 1.0e-08
HMMER 663–716 PF01391 HMMER/Pfam PF01391 E: 8.7e-08
HMMER 717–774 PF01391 HMMER/Pfam PF01391 E: 1.5e-06
HMMER 772–827 PF01391 HMMER/Pfam PF01391 E: 3.2e-05
CDD 778–1407 Glutenin_hmw superfamily (cl26620) E-value: 1.13 × 10^-13 (-) E: 1.1e-13
HMMER 821–877 PF01391 HMMER/Pfam PF01391 E: 6.9e-08
InterProScan/PANTHER 826–1021 BONE MARROW PROTEOGLYCAN (PTHR10068) PANTHER PTHR10068 E: 0.00e+00 E: 0.0e+00
Score: 463
HMMER 882–934 PF01391 HMMER/Pfam PF01391 E: 2.4e-06
HMMER 1036–1083 PF01391 HMMER/Pfam PF01391 E: 1.1e-03
HMMER 1082–1135 PF01391 HMMER/Pfam PF01391 E: 2.8e-06
HMMER 1140–1188 PF01391 HMMER/Pfam PF01391 E: 2.5e-05
HMMER 1199–1247 PF01391 HMMER/Pfam PF01391 E: 9.9e-05
HMMER 1265–1315 PF01391 HMMER/Pfam PF01391 E: 1.7e-06
HMMER 1326–1374 PF01391 HMMER/Pfam PF01391 E: 1.7e-05
ScanProsite 138–163 CHIT_BIND_RR_1 (PS00233) ×2 PS00233 —
B. Signal Sequence & Topology
Signal Peptide
Residues 1–22
Cleavage after residue 22
Phobius
C. Functional Sites
?
ProgramPositionFeatureEvidenceConfidence
None detected. (Run ScanProsite or InterProScan to find ACT_SITE, DISULFID, BINDING residues.)
D. Low-confidence / Supplementary
Real parsed hits below strict threshold — include in figure at your discretion
ProgramIntervalName / FeatureReason flagged
HMMER 920–975 PF01391 evalue_too_high (3.12e-01 > 1e-2)
HMMER 965–1024 PF01391 evalue_too_high (3.35e-02 > 1e-2)
HMMER 1385–1421 PF01391 evalue_too_high (1.79e-02 > 1e-2)
Pfam Domain Hits (HMMER)
?
Raw HMMER results — merged multi-source view in Annotations tab
DomainDescription Start End Length E-value
PF01391 498 556 59 aa 7.44e-06
PF01391 540 598 59 aa 8.17e-08
PF01391 605 661 57 aa 1.04e-08
PF01391 663 716 54 aa 8.68e-08
PF01391 717 774 58 aa 1.53e-06
PF01391 772 827 56 aa 3.18e-05
PF01391 821 877 57 aa 6.86e-08
PF01391 882 934 53 aa 2.43e-06
PF01391 920 975 56 aa 3.12e-01
PF01391 965 1024 60 aa 3.35e-02
PF01391 1036 1083 48 aa 1.06e-03
PF01391 1082 1135 54 aa 2.83e-06
PF01391 1140 1188 49 aa 2.48e-05
PF01391 1199 1247 49 aa 9.94e-05
PF01391 1265 1315 51 aa 1.66e-06
PF01391 1326 1374 49 aa 1.71e-05
PF01391 1385 1421 37 aa 1.79e-02
PF01391 1430 1466 37 aa 2.13e+01
Signal Peptide
?
Phobius
✓ Detected
Residues 1–22
Cleavage after residue 22
Mature protein starts at residue 23
SignalP-4.1
Not run
Transmembrane Topology
? via Phobius (EBI)
TM Helices
0
Topology String
SIGNAL 1-22; 1-8 N-REGION; 9-17 H-REGION; 18-22 C-REGION; 23-1640 NON CYTOPLASMIC
No transmembrane helices detected.